flowWorkspace - Infrastructure for representing and interacting with gated and ungated cytometry data sets.
This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.
Last updated 27 days ago
immunooncologyflowcytometrydataimportpreprocessingdatarepresentation
9.28 score 10 packages 482 scripts 2.2k downloadsflowStats - Statistical methods for the analysis of flow cytometry data
Methods and functionality to analyse flow data that is beyond the basic infrastructure provided by the flowCore package.
Last updated 27 days ago
immunooncologyflowcytometrycellbasedassays
8.45 score 15 stars 1 packages 188 scripts 974 downloadsflowClust - Clustering for Flow Cytometry
Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.
Last updated 27 days ago
immunooncologyclusteringvisualizationflowcytometry
7.45 score 6 packages 85 scripts 1.2k downloads