Purpose | Basics on GatingSet | GatingHierarchy | Build the GatingSet from scratch | Archive and Clone | The cytoframe and cytoset classes | Reading a cytoframe | cytoframe Accessors | Pass By Reference | Views | Deep Copy | Interconversion between cytoframe and flowFrame | Saving/Loading a cytoframe in h5 | cytoset methods | Troubleshooting and error reporting

Usage | Arguments | Remove the redudant leaf/terminal nodes | Hide the non-leaf nodes | Isomorphism | convenient wrapper for merging | Grouping by tree structures | Check if the discrepancy can be resolved by dropping leaf nodes | Remove the redundant channels from GatingSet

Licensing | Overview | Installation | Unix/Linux/Mac Users | Windows Users | Example: Clustering of the Rituximab Dataset | The Core Function \label | Visualization of Clustering Results | Integration with flowCore | Using Priors

Introduction | Probability Binning